Package index • ConApp

Package Documentation

Package-level documentation

ConApp ConApp-package: Web Interface for 'ConR' package

ConApp-exports %>%: ConApp exported operators and S3 methods

Launch Application

Main functions to launch the ConApp Shiny application

launch(): Launch ConR application

conr_ui(): UI - ConR user interface

conr_server(): Application's server

Data Import Modules

Shiny modules for importing species occurrence data from various sources

data_import_gbif_ui() data_import_gbif_server(): Import data from GBIF Module

data_import_ui() data_import_server(): Import data Module

data_import_polygon_ui() data_import_polygon_server(): Import data from Rainbio via polygon drawing Module

data_import_rainbio_ui() data_import_rainbio_server(): Import data from Rainbio Module

data_full_ui() data_full_server(): Data Module

data_source_ui() data_source_server(): Data source Module

Data Processing & Validation

Modules for validating and filtering occurrence data

data_filterout_ui() data_filterout_server() data_validation_ui() data_validation_server(): Data filtering out Module

data_variable_ui() data_variable_server(): Variable selection Module

data_display_ui() data_display_server(): Display data Module

prepare_data_validate() validation_rules() exclude_violating_records() identify_violating_records() extract_violating_records(): Validation of data

filtering_out_data(): Filtering out

coord_accuracy(): compute accuracy of coordinates

Analysis & Mapping

Modules for mapping species and computing conservation parameters

mapping_ui() mapping_server(): Map point selection Module

criterion_b_ui() criterion_b_server(): Criterion B analysis

Reporting

Generate conservation assessment reports

summary_report_ui() summary_report_server(): Summary report

Database Queries

Functions to query external databases (GBIF, RainBio)

query_exact_match(): Query exact match

query_fuzzy_match(): Query fuzzy match

query_gbif_poly(): Retrieve GBIF occurrences from polygon

query_rb_poly(): Extract the rainbio database from a spatial query

query_rb_taxa(): Extract the Rainbio database from a species list

query_taxa(): List, extract taxa

retrieve_occ_data(): Retrieve GBIF occurrences

search_species_info(): Search species information

Spatial Data

Functions for working with spatial data and threat layers

extract_overlap_shp(): Evaluate intersection

collect_shp(): Extract a shapefile

collect_rast(): Extract a raster

conn_mydb_rb(): Load the rainbio database

conn_mydb_shp(): Load the database

Data Quality

Functions for identifying and handling data quality issues

prepare_data_validate() validation_rules() exclude_violating_records() identify_violating_records() extract_violating_records(): Validation of data

Utilities & Helpers

Helper functions and utilities

bs_theme_conr(): Bootstrap theme for ConR