Taxonomic Name Standardization App — app_taxonomic

Main Shiny application for standardizing taxonomic names against the backbone database. This app provides a modern, modular interface for matching species names with intelligent fuzzy matching and manual review capabilities.

Usage

app_taxonomic_match(
  data = NULL,
  name_column = NULL,
  language = "fr",
  min_similarity = 0.6,
  max_suggestions = 10,
  mode = "interactive",
  pool_taxa = NULL
)

Arguments

data: Optional data.frame or reactive, pre-loaded data to standardize
name_column: Optional character, pre-selected column name containing taxa
language: Character, initial language ("en" or "fr"), default: "fr"
min_similarity: Numeric, minimum similarity for fuzzy matching (0-1), default: 0.3
max_suggestions: Integer, maximum suggestions per name, default: 10
mode: Character, review mode ("interactive" or "batch"), default: "interactive"
pool_taxa: Optional connection pool for taxa database (will prompt for login if NULL)

Value

Shiny app object