Enrich individuals with all traits

Enrich with individual-level traits, taxonomic traits, and aggregate to genus level if needed

Usage

enrich_with_traits(
  individuals,
  con,
  extract_individual_features = TRUE,
  extract_traits = TRUE,
  traits_to_genera = FALSE,
  wd_fam_level = FALSE,
  show_multiple_census = FALSE,
  issues = c("remove", "include", "ignore"),
  include_measurement_ids = FALSE,
  census_strategy = c("last", "first", "mean"),
  individual_features_format = c("wide", "long", "census_pairs")
)

Arguments

individuals

Data frame of individuals

con

Database connection

extract_individual_features

Extract individual-level traits

extract_traits

Extract taxonomic traits

traits_to_genera

Aggregate traits to genus level

wd_fam_level

Use family-level wood density

show_multiple_census

Show multiple census data

issues

Character. How to handle flagged measurements: "remove", "include", or "ignore".

Value

Data frame enriched with traits