Merge individual records with taxonomic information

Merges individual tree records with resolved taxonomy from both direct links and specimen links, handling synonym resolution

Usage

merge_individuals_taxa(
  id_individual = NULL,
  id_plot = NULL,
  id_tax = NULL,
  clean_columns = TRUE,
  con_taxa = NULL,
  con = NULL,
  backbone = c("internal", "wcvp")
)

Arguments

id_individual

vector of individual IDs to filter

id_plot

vector of plot IDs to filter

id_tax

vector of taxa IDs to filter final results

clean_columns

logical, whether to remove redundant columns

con_taxa

connexion

con

connexion

backbone

character. "internal" (default) or "wcvp". When "wcvp", results are enriched with WCVP names via the link table.

Value

A tibble with individuals and resolved taxonomy

Author

Gilles Dauby, gilles.dauby@ird.fr