Package index

Image proccessing

Generate and align orthomosaics

generate_Mosa()

Generate orthomosaics

align_Mosa()

Align orthomosaics by using AROSICS in R

apply_saved_matrix()

Applies an already saved AROSICS transform to a new image

Extract crowns data

check_crownFile()

Check the crowns file compatibility

create_labelingFile()

Create xlsx labeling file

extract_crownImages()

Extract crowns images

extract_rgbValues()

Extract spectral indices from RGB at the crown scale

merge_values()

Merge labels and rgb values

pivot_Labels()

Format labels values from wide data to long data

Plots

Plot crowns data

heatmap_Labels()

Plot the heatmap of Labels

plot_signal()

Plot the spectral signal over time

Shiny applications

shiny_labels()

Labeling shiny app

shiny_visualisation()

Visualisation shiny app

Others functions

check_availableCrowns()

Check the number of crowns included in each image

create_files_architecture()

Create the recommended files architecture

create_nonNA_bbox()

Extract and export the non NA area of images.

extr_dates()

Extract dates from files names

detect_conda()

Detect conda installation or offer Miniconda installation

Datasets

The four datasets used for examples and vignettes

crowns

crowns delineation data

data_labeling

Labeling data

rgb_data

RGB indices data